Download

Example files

Simple models to test packages

activation.cso

activation.csml

dimerization.cso

dimerization.csml

translocation.cso

translocation.csml

Macrophage models in CSML

MACPAK: Simulatable Macrophage Pathway Knowledgebase

Packages

Package Download (max heap size:1024M)

CSOValidatorPackage.jar The package to validate CSO files and generate validated CSO files. (last update Feb. 16 2012)

CSMLValidatorPackage.jar The package to validate CSML files. It converts CSML to CSO first and does the same thing with CSOValidatorPackage.jar. (last update Feb. 16 2012)

CSOValidatorPackage.bat The batch file to execute CSOValidatorPackage.jar in Windows. Please save this file in the same directory as CSOValidatorPackage.jar.

CSOValidatorPackage.sh The script file to execute CSOValidatorPackage.jar in Linux/Unix. Please save this file in the same directory as CSOValidatorPackage.jar.

CSMLValidatorPackage.bat The batch file to execute CSMLValidatorPackage.jar in Windows. Please save this file in the same directory as CSMLValidatorPackage.jar.

CSMLValidatorPackage.sh The script file to execute CSMLValidatorPackage.jar in Linux/Unix. Please save this file in the same directory as CSMLValidatorPackage.jar.

Package Download (max heap size:512M)

CSOValidatorPackage_small.jar The package to validate CSO files and generate validated CSO files. (last update Feb. 16 2012)

CSMLValidatorPackage_small.jar The package to validate CSML files. It converts CSML to CSO first and does the same thing with CSOValidatorPackage.jar. (last update Feb. 16 2012)

CSOValidatorPackage_small.bat The batch file to execute CSOValidatorPackage_small.jar in Windows. Please save this file in the same directory as CSOValidatorPackage_small.jar.

CSOValidatorPackage_small.sh The script file to execute CSOValidatorPackage_small.jar in Linux/Unix. Please save this file in the same directory as CSOValidatorPackage_small.jar.

CSMLValidatorPackage_small.bat The batch file to execute CSMLValidatorPackage_small.jar in Windows. Please save this file in the same directory as CSMLValidatorPackage_small.jar.

CSMLValidatorPackage_small.sh The script file to execute CSMLValidatorPackage_small.jar in Linux/Unix. Please save this file in the same directory as CSMLValidatorPackage_small.jar.